publication_ASBA
Back

Aggarwal, N., Kitano, S., Puah, G. R. Y., Kittelmann, S., Hwang, I. Y., & Chang, M. W. (2023). Microbiome and Human Health: Current Understanding, Engineering, and Enabling Technologies. Chemical Reviews, 123(1), 31–72. https://doi.org/10.1021/acs.chemrev.2c00431

 

Aggarwal, N., Liang, Y., Foo, J. L., Ling, H., Hwang, I. Y., & Chang, M. W. (2023). FELICX: A robust nucleic acid detection method using flap endonuclease and CRISPR-Cas12. Biosensors and Bioelectronics, 222, 115002. https://doi.org/10.1016/j.bios.2022.115002

 

Cao, Q., Huang, W., Zhang, Z., Chu, P., Wei, T., Zheng, H., & Liu, C. (2023). The Quantification of Bacterial Cell Size: Discrepancies Arise from Varied Quantification Methods. Life, 13(6), Article 6. https://doi.org/10.3390/life13061246

 

Chen, Y., Hysolli, E., Chen, A., Casper, S., Liu, S., Yang, K., Liu, C., & Church, G. (2022). Multiplex base editing to convert TAG into TAA codons in the human genome. Nature Communications, 13(1), Article 1. https://doi.org/10.1038/s41467-022-31927-8

 

Choe, D., Kim, U., Hwang, S., Seo, S. W., Kim, D., Cho, S., Palsson, B., & Cho, B.-K. (2022). Revealing Causes for False-Positive and False-Negative Calling of Gene Essentiality in Escherichia coli Using Transposon Insertion Sequencing. MSystems, 8(1), e00896-22. https://doi.org/10.1128/msystems.00896-22

 

Elkasaby, T., Hanh, D. D., Kawaguchi, H., Kondo, A., & Ogino, C. (2023). Effect of different metabolic pathways on itaconic acid production in engineered Corynebacterium glutamicum. Journal of Bioscience and Bioengineering, 136(2), 109–116. https://doi.org/10.1016/j.jbiosc.2023.05.006

 

Gencer, G., Mancuso, C., Chua, K. J., Ling, H., Costello, C. M., Chang, M. W., & March, J. C. (2023). Engineering Escherichia coli for diagnosis and management of hyperuricemia. Frontiers in Bioengineering and Biotechnology, 11. https://doi.org/10.3389/fbioe.2023.1191162

 

Hanaya, R., Kubota, Y., Mizobuchi, M., Iida, K., Ono, T., Motooka, H., Nakano, N., Fujimoto, A., Iwasaki, M., Fukuda, M., Kondo, A., Uruno, K., Yamamuro, S., Yamaguchi, K., Onishi, K., Ngo, L. Y., & Inoue, Y. (n.d.). Intravenous perampanel as an alternative to the oral formulations in Japanese patients with epilepsy. Epilepsia Open, n/a(n/a). https://doi.org/10.1002/epi4.12804

 

Haraguchi, Y., Kato, Y., Inabe, K., Kondo, A., Hasunuma, T., & Shimizu, T. (2023). Circular cell culture for sustainable food production using recombinant lactate-assimilating cyanobacteria that supplies pyruvate and amino acids. Archives of Microbiology, 205(7), 266. https://doi.org/10.1007/s00203-023-03607-8

 

Hwang, S., Joung, C., Kim, W., Palsson, B., & Cho, B.-K. (2023). Recent advances in non-model bacterial chassis construction. Current Opinion in Systems Biology, 100471. https://doi.org/10.1016/j.coisb.2023.100471

 

Inokuma, K., Sasaki, D., Kurata, K., Ichikawa, M., Otsuka, Y., & Kondo, A. (2023). Sulfated and non-sulfated chondroitin affect the composition and metabolism of human colonic microbiota simulated in an in vitro fermentation system. Scientific Reports, 13(1), Article 1. https://doi.org/10.1038/s41598-023-38849-5

 

Kato, Y., Inabe, K., Haraguchi, Y., Shimizu, T., Kondo, A., & Hasunuma, T. (2023). L-Lactate treatment by photosynthetic cyanobacteria expressing heterogeneous L-lactate dehydrogenase. Scientific Reports, 13(1), Article 1. https://doi.org/10.1038/s41598-023-34289-3

 

Kim, B.-N., Choi, W., Cho, B.-K., & Min, J. (2023). In vitro application of redesigned vacuole extracted in yeast. Molecular & Cellular Toxicology, 19(1), 27–31. https://doi.org/10.1007/s13273-022-00301-6

 

Kim, T., Cho, B.-K., Kim, Y.-H., & Min, J. (2023). Novel peptide identified from viable-cell based phage display technique regulates growth cycle of Daphnia magna. Environmental Pollution, 327, 121556. https://doi.org/10.1016/j.envpol.2023.121556

 

Kitano, S., Lin, C., Foo, J. L., & Chang, M. W. (2023). Synthetic biology: Learning the way toward high-precision biological design. PLOS Biology, 21(4), e3002116. https://doi.org/10.1371/journal.pbio.3002116

 

Koh, E., Hwang, I. Y., Lee, H. L., De Sotto, R., Lee, J. W. J., Lee, Y. S., March, J. C., & Chang, M. W. (2022). Engineering probiotics to inhibit Clostridioides difficile infection by dynamic regulation of intestinal metabolism. Nature Communications, 13(1), Article 1. https://doi.org/10.1038/s41467-022-31334-z

 

Ling, H., Liu, R., Sam, Q. H., Shen, H., Chai, L. Y. A., & Chang, M. W. (2023). Engineering of a probiotic yeast for the production and secretion of medium-chain fatty acids antagonistic to an opportunistic pathogen Candida albicans. Frontiers in Bioengineering and Biotechnology, 11. https://doi.org/10.3389/fbioe.2023.1090501

 

Matsuoka, Y., Fujie, N., Nakano, M., Koshiba, A., Kondo, A., & Tanaka, T. (2023). Triacetic acid lactone production using 2-pyrone synthase expressing Yarrowia lipolytica via targeted gene deletion. Journal of Bioscience and Bioengineering. https://doi.org/10.1016/j.jbiosc.2023.07.006

 

Nguyen, T. T., Bui, L. M., Byun, J.-Y., Cho, B.-K., & Kim, S. C. (2023). Exploring the Potential of a Genome-Reduced Escherichia coli Strain for Plasmid DNA Production. International Journal of Molecular Sciences, 24(14), Article 14. https://doi.org/10.3390/ijms241411749

 

Putra, F. J. N., Kahar, P., Kondo, A., & Ogino, C. (2023). The bioconversion of lignin derivative aldehydes into high-value aromatic alcohols and lipids via Lipomyces starkeyi. Biochemical Engineering Journal, 200, 109065. https://doi.org/10.1016/j.bej.2023.109065

 

Rahman, A. T., Shin, J., Whang, C.-H., Jung, W., Yoo, D., Seo, C., Cho, B.-K., & Jon, S. (2023). Bilirubin Nanomedicine Rescues Intestinal Barrier Destruction and Restores Mucosal Immunity in Colitis. ACS Nano, 17(11), 10996–11013. https://doi.org/10.1021/acsnano.3c03252

 

Sasaki, D., Sasaki, K., Abe, A., Ozeki, M., & Kondo, A. (2023). Effects of partially hydrolyzed guar gums of different molecular weights on a human intestinal in vitro fermentation model. Journal of Bioscience and Bioengineering, 136(1), 67–73. https://doi.org/10.1016/j.jbiosc.2023.04.002

 

Shin, J., Bae, J., Lee, H., Kang, S., Jin, S., Song, Y., Cho, S., & Cho, B.-K. (2023). Genome-wide CRISPRi screen identifies enhanced autolithotrophic phenotypes in acetogenic bacterium Eubacterium limosum. Proceedings of the National Academy of Sciences, 120(6), e2216244120. https://doi.org/10.1073/pnas.2216244120

 

Sieow, B. F.-L., De Sotto, R., Seet, Z. R. D., Hwang, I. Y., & Chang, M. W. (2023). Synthetic Biology Meets Machine Learning. In K. Selvarajoo (Ed.), Computational Biology and Machine Learning for Metabolic Engineering and Synthetic Biology (pp. 21–39). Springer US. https://doi.org/10.1007/978-1-0716-2617-7_2

 

Wei, T., Lai, W., Chen, Q., Zhang, Y., Sun, C., He, X., Zhao, G., Fu, X., & Liu, C. (2022). Exploiting spatial dimensions to enable parallelized continuous directed evolution. Molecular Systems Biology, 18(9), e10934. https://doi.org/10.15252/msb.202210934

 

Yoo, D., Hong, S.-J., Yun, S., Kang, M.-J., Cho, B.-K., Lee, H., Choi, H.-K., Kim, D.-M., & Lee, C.-G. (2023). Metabolic Engineering for Redirecting Carbon to Enhance the Fatty Acid Content of Synechocystis sp. PCC6803. Biotechnology and Bioprocess Engineering, 28(2), 274–280. https://doi.org/10.1007/s12257-020-0386-x

 

Zhang, X.-E., Liu, C., Dai, J., Yuan, Y., Gao, C., Feng, Y., Wu, B., Wei, P., You, C., Wang, X., & Si, T. (2023). Enabling technology and core theory of synthetic biology. Science China Life Sciences, 66(8), 1742–1785. https://doi.org/10.1007/s11427-022-2214-2